PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00967.10
Common NameJCGZ_20620, LOC105646052
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YC
Protein Properties Length: 136aa    MW: 15101.4 Da    PI: 8.2423
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00967.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC110.87.7e-35221031999
          NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                    h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw+ + + krrtl+k d+a+av  tdifdflv+ v ++
  Jcr4S00967.10  22 HSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIKELTQRSWMVTMQGKRRTLHKEDVASAVIATDIFDFLVNLVDNN 103
                    99**********825689**********************************************************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.79E-261796IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-311987IPR009072Histone-fold
PfamPF008082.4E-212387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRQAGTYSGL LCGGLSGRTG PHSLPLARIK KIMKKSGDDV KMISGEAPIV FSKACELFIK  60
ELTQRSWMVT MQGKRRTLHK EDVASAVIAT DIFDFLVNLV DNNHSTNNNS SMDKPQEIES  120
INDVVMHLPS TTEYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-262210040117HapE
4g92_C1e-262210040117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087210.12e-99PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL31e-32NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA0A067K0Y62e-99A0A067K0Y6_JATCU; Uncharacterized protein
STRINGPOPTR_0001s09100.14e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.38e-34nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]